RNA-Seq

Characterization of the cytokinin-responsive transcriptome in rice

December 15, 2016

Tracy Raines, Ivory C. Blakley, Yu-Chang Tsai, Jennifer M. Worthen, José Manuel Franco-Zorrilla, Roberto Solano, G. Eric Schaller, Ann E. Loraine and Joseph J. Kieber (2016). Characterization of the cytokinin-responsive transcriptome in rice. BMC Plant Biology 16:260. Sequencing was done at the David H. Murdock Research Institute in Kannapolis. Author Affiliations Department of Biology, University […]

A Comparison of transgenic and wild type soybean seeds: analysis of transcriptome profiles using RNA-Seq

October 01, 2015

A Comparison of transgenic and wild type soybean seeds: analysis of transcriptome profiles using RNA-Seq, BMC Biotechnol, 2015 Oct 1, Lambirth KC1, Whaley AM2, Blakley IC3, Schlueter JA4, Bost KL5, Loraine AE6, Piller KJ7. 1Department of Biological Sciences, University of North Carolina at Charlotte, Charlotte, NC, 28223, USA. kclambirth@uncc.edu. 2Department of Bioinformatics and Genomics, University of North Carolina […]

RNA-seq analysis reveals genetic response and tolerance mechanisms to ozone exposure in soybean

June 04, 2015

RNA-seq analysis reveals genetic response and tolerance mechanisms to Ozone exposure in soybean, BMC Genomics. 2015 Jun 4, Whaley A1, Sheridan J2, Safari S3, Burton A4, Burkey K5, Schlueter J6. Author information 1Department of Bioinformatics and Genomics, University of North Carolina at Charlotte, 9201 University City Blvd, Charlotte, NC, 28223, USA. awhaley9@uncc.edu. 2Department of Bioinformatics and Genomics, University of […]

Analysis and Visualization of RNA-Seq Expression Data Using RStudio, Bioconductor, and Integrated Genome Browser

March 19, 2015

Analysis and Visualization of RNA-Seq Expression Data Using RStudio, Bioconductor, and Integrated Genome Browser, Methods Mol Biol. 2015 Mar, Loraine AE1, Blakley IC, Jagadeesan S, Harper J, Miller G, Firon N. Department of Bioinformatics and Genomics, University of North Carolina at Charlotte, North Carolina Research Campus, Charlotte, NC, USA, aloraine@uncc.edu. Abstract Sequencing costs are falling, but the […]

Analysis of pollen-specific alternative splicing in Arabidopsis thaliana via semi-quantitative PCR

November 06, 2014

Analysis of pollen-specific alternative splicing in Arabidopsis thaliana via semi-quantitative PCR, PeerJ PrePrints, 2014 Nov 6,  April D Estrada, Nowlan H Freese, Ann E Loraine​ Department of Bioinformatics and Genomics, University of North Carolina at Charlotte, Kannapolis, NC. Abstract  Alternative splicing enables a single gene to produce multiple mRNA isoforms by varying splice site selection. In animals, […]